simspace

• simspace package
  • Submodules
  • simspace.core module
    • SimSpace
      • SimSpace.create_niche()
      • SimSpace.create_niche3D()
      • SimSpace.create_omics()
      • SimSpace.density_sampler()
      • SimSpace.fit_scdesign()
      • SimSpace.fit_srtsim()
      • SimSpace.get_custom_neighbors()
      • SimSpace.get_custom_neighbors3D()
      • SimSpace.gibbs_sampler()
      • SimSpace.gibbs_sampler3D()
      • SimSpace.initialize()
      • SimSpace.initialize3D()
      • SimSpace.manual_niche()
      • SimSpace.moran_I()
      • SimSpace.perturbation()
      • SimSpace.perturbation3D()
      • SimSpace.plot()
      • SimSpace.plot3D()
      • SimSpace.plot_grid()
      • SimSpace.plot_niche()
      • SimSpace.print()
      • SimSpace.save()
      • SimSpace.update_seed()
  • simspace.spatial module
    • calculate_gearys_C()
    • calculate_interaction_score()
    • calculate_local_entropy()
    • calculate_local_morans_I()
    • calculate_morans_I()
    • compute_variogram()
    • generate_offsets()
    • generate_offsets3D()
    • integrate_gearys_C()
    • integrate_morans_I()
    • integrate_variogram()
    • plot_local_entropy()
    • plot_local_morans_I()
    • spatial_stat()
  • simspace.util module
    • convolve()
    • generate_random_parameters()
    • load_params()
    • save_params()
    • sim_from_json()
    • sim_from_params()
  • simspace.niche module
    • create_ellipse()
    • create_rectangle()
    • create_ring()
    • create_vessel()
  • simspace.omics module
    • run_splatter()
    • scdesign_fit()
    • simOmics()
    • simOmicsMeta()
    • simSpatialOmics()
    • splatter_fit()
    • srtsim_fit()
  • simspace.optimize module
    • spatial_fit()
  • simspace.plot module
    • plot_gene()
    • spatial_pie()
  • Module contents